Publications

  1. Khaira, H., Patro, S., Lee, K. 2022. PKCdelta plays a role in both circadian and circannual rhythms. bioRxiv, https://doi.org/10.1101/2021.09.29.462474
  2. An, Z., Piccoli, B., Merrow, M., and Lee, K. A Unified Model for Entrainment by Circadian Clocks: Dynamic Circadian Integrated Response Characteristic (dCiRC). J Biol Rhythms 37, 202-215. 10.1177/07487304211069454. PubMed PMID: 35156426.
  3. An, Z., Merrill, N.J., Lee, K., Robin, R., Hayat, A., Zapfe, O., and Piccoli, B. (2021). A Two-Step Model of Human Entrainment: A Quantitative Study of Circadian Period and Phase of Entrainment. Bull Math Biol 83, 12. PubMed PMID: 33415476.
  4. Waters, J.C., Jhaveri D., Biffinger J.C., Lee K. Quantitative trait loci (QTL) underlying phenotypic variation in bioethanol-related processes in Neurospora crassa. PLOS ONE, 15, e0221737. PubMed PMID: 32017762.
  5. Koritala B.S.C., Wager C, Waters J.C, Pachucki R, Piccoli B, Feng Y, Scheinfeldt LB, Shende SM, Park S, Hozier JI, Lalakia P, Kumar D. and Lee K. Habitat-Specific Clock Variation and Its Consequence on Reproductive Fitness. Journal of Biological Rhythms, doi.org/10.1177/0748730419896486. PubMed PMID: 31878828.
  6. Koritala B.S.C., and Lee K. Chapter One – Natural Variation of the Circadian Clock in Neurospora. Adv Genet. 2017;99:1-37. doi: 10.1016/bs.adgen.2017.09.001. Epub 2017 Oct 12. PubMed PMID: 29050553.
  7. Lee K., Shiva Kumar, P., McQuade, S., Lee, J.Y., Park, S., An, Z., and Piccoli, B. 2017. Experimental and Mathematical Analyses Relating Circadian Period and Phase of Entrainment in Neurospora crassa. J Biol Rhythms. 2017 Dec;32(6):550-559. doi: 10.1177/0748730417738611. Epub 2017 Nov 28. PubMed PMID: 29183256.
  8. Waters, J.C., Nixon, A., Dwyer, M., Biffinger, J.C., and Lee, K. 2017. Developing elite Neurospora crassastrains for cellulosic ethanol production using fungal breeding. J Ind Microbiol Biotechnol. 2017 Aug;44(8):1137-1144. doi: 10.1007/s10295-017-1941-0. Epub 2017 Apr 20. PubMed PMID: 28429154; PubMed Central PMCID: PMC5511601.
  9. Huggins T.M., Whiteley J.M., Love, C.T., Lee K., Lee S-H.,Ren Z.J., Biffinger, J.C. 2016. Controlled Growth of Nanostructured Biotemplates with Cobalt and Nitrogen Codoping as a Binderless Lithium-Ion Battery Anode. ACS Appl Mater Interfaces. 2016 Oct 12;8(40):26868-26877. Epub 2016 Sep 28. PubMed PMID: 27636014.
  10. Cockrell A.L., Pirlo, R.K., Babson D.M., Cusick K.D., Soto C.M., Petersen E.R., Davis M.J., Hong C.I., Lee K., Fitzgerald L.A., et al. 2015. Suppressing the Neurospora crassa circadian clock while maintaining light responsiveness in continuous stirred tank reactors. Sci Rep. 2015 Jun 2;5:10691. doi: 10.1038/srep10691. PubMed PMID: 26031221; PubMed Central PMCID: PMC4451529.
  11. Starkey N., McDonald J., Lee K.PERIOD-1 is a component of the Neurospora metabolic oscillator. Lett. Gen. Microb. 1:13–15
  12. Lee K., Dighton J., Genomics of Soil- and Plant-Associated Fungi. Horwitz BA, Mukherjee PK, Mukherjee M, Kubicek CP, editors. Heidelberg New York Dordrecht London: Springer; 2013. Chapter 3, Advancement of Functional Genomics of a Model Species of Neurospora and Its Use for Ecological Genomics of Soil Fungi; p.29-44. 388p.
  13. Lee K. Asexual and sexual developments of Neurospora crassa on natural substrata. Fungal Ecology 5:223-229.
  14. Kim S, Singh P, Park J, Park S, Friedman A, Zheng T, Lee Y-H, Lee K. 2011. Genetic and molecular characterization of a blue light photoreceptor MGWC-1 in Magnaporth oryzae. Fungal Genet. Biol. 48:400-407.
  15. Lee K., Dighton J. 2010 Neurospora, a potential fungal organism for experimental and evolutionary ecology. Fungal Biology Reviews. 24:85-89. doi:10.1016/j.fbr.2010.09.001
  16. Kim T-S, Booth J, Gauch HGJ, Sun Q, Park J, Lee Y-H, Lee K. 2008 Simple sequence repeats in Neurospora crassa: distribution, polymorphism and evolutionary inference. BMC Genomics 9:31.
  17. Park J, Park B, Jung K, Jang S, Yu K, Choi J, Kong S, Park J, Kim S, Kim H, Kim S, Kim J, Blair J, Lee K, Kang S, Lee YH. 2008 CFGP: A Web-based, Comparative Fungal Genomics Platform. Nucl. Acid Res. 36:D562-D571.
  18. Kim T-S, Logsdon BA, Park S, Mezey JG, Lee K. 2007 Quantitative trait loci for the circadian clock in Neurospora crassa. Genetics 177:2335-2347.
  19. Michael TP, Park S, Kim T-S, Booth J, Byer A, Sun Q, Chory J, Lee K. 2007 Simple sequence repeats provide a substrate for phenotypic variation in the Neurospora crassa circadian clock. PLoS ONE 2: e795.
  20. Lee K, Singh P., Chung W.-C., Joshua Ash, J., Kim T. S., Hang L., and Park S. 2006 Light regulation of asexual development in the rice blast fungus, Magnaporthe oryzae.  Fungal Genet. Biol. 23:259-268.
  21. Park S, and Lee K. 2004. Inverted Race Tube Assay for Circadian Clock Studies of the Neurospora Accessions,” Fungal Genetics Reports: Vol. 51, Article 5. https://doi.org/10.4148/1941-4765.1135
  22. Dunlap JC, Loros JJ, Denault D, Lee K, Froehlich A, Colot H, Shi M, Pregueiro A. 2004. Genetics and molecular biology of circadian rhythms. In The mycota – a comprehensive treatise on fungi as experimental systems for basic and applied research, 2nd Edition, Berlin, Springer, pp 209-229.
  23. Froehlich AC, Pregueiro A, Lee K, Denault D, Colot H, Nowrousian M, Loros JJ, Dunlap JC. 2003 The molecular workings of the Neurospora biological clock. Novartis Found Symp. 253:184-202.
  24. Lee K, Loros JJ, Dunlap JC. 2003. Roles for WHITE COLLAR-1 in circadian and general photoreception in Neurospora crassa. Genetics 163:103-114.
  25. Lee K, Loros JJ, Dunlap JC. 2000. Interconnected feedback loops in the Neurospora circadian system. Science 289:107-110.
  26. Lee K and Ebbole DJ. 1998. Analysis of two transcription activation elements in the promoter of the developmentally regulated con-10 gene of Neurospora crassa. Fungal Genetics and Biology 23; 259-268.
  27. Lee K and Ebbole DJ. 1998. Tissue-specific repression of starvation and stress responses of the Neurospora crassa con-10 gene is mediated by RCO1. Fungal Genetics and Biology 23;269-278.
  28. Lee K., and Ebbole DJ. 1996. A reliable microplate assay for determination of b-galactosidase activity in Neurospora crassa strains bearing lacZ fusions,” Fungal Genetics Reports: Vol. 43, Article 15. https://doi.org/10.4148/1941-4765.1311